Publications

Publications on Google Scholar and PubMed 

2023

• Ko, D.K., Kim, J.Y., Thibault, E.A., Brandizzi F. An IRE1-proteasome system signalling cohort controls cell fate determination in unresolved proteotoxic stress of the plant endoplasmic reticulum. Nat. Plants 9, 1333–1346 (2023). https://doi.org/10.1038/s41477-023-01480-3
• Kim SJ, Bhandari DD, Sokoloski R, Brandizzi F. Immune activation during Pseudomonas infection causes local cell wall remodeling and alters AGP accumulation. Plant J. 2023 Jul 26. doi: 10.1111/tpj.16393. Epub ahead of print. PMID: 37496362.
• Kim SJ, Zemelis-Durfee S, Mckinley B, Sokoloski R, Aufdemberge W, Mullet J, Brandizzi F. Cell- and development-specific degradation controls the levels of mixed-linkage glucan in sorghum leaves. Plant J. 2023 Jul 3. doi: 10.1111/tpj.16376. Epub ahead of print. PMID: 37395650.
• Sharma N, Froehlich JE, Rillema R, Raba DA, Chambers T, Kerfeld CA, Kramer DM, Walker B, Brandizzi F. Arabidopsis stromal carbonic anhydrases exhibit non-overlapping roles in photosynthetic efficiency and development. Plant J. 2023 Jul;115(2):386-397. doi: 10.1111/tpj.16231. Epub 2023 Apr 10. PMID: 37010739.
• Cho H, Banf M, Shahzad Z, Van Leene J, Bossi F, Ruffel S, Bouain N, Cao P, Krouk G, De Jaeger G, Lacombe B, Brandizzi F, Rhee SY, Rouached H. ARSK1 activates TORC1 signaling to adjust growth to phosphate availability in Arabidopsis. Curr Biol. 2023 May 8;33(9):1778-1786.e5. doi: 10.1016/j.cub.2023.03.005. Epub 2023 Mar 23. PMID: 36963384; PMCID: PMC10175222.
• DK Ko, F Brandizzi. Coexpression Network Construction and Visualization from Transcriptomes Underlying ER Stress Responses. Methods Mol Biol. 2023;2581:385-401.
• SJ Kim, F Brandizzi. Microscopy and Immunocytochemistry-Based Methods to Study Cell Wall Biosynthetic Enzymes in the Golgi. Methods Mol Biol. 2023;2557:39-51. doi: 10.1007/978-1-0716-2639-9_4.

2022

• DK Ko, F Brandizzi. Transcriptional competition shapes proteotoxic ER stress resolution. Nat Plants. 2022 May;8(5):481-490. doi: 10.1038/s41477-022-01150-w. Epub 2022 May 16.
• Y Pu, F Brandizzi. Protein Preparation for Proteomic Analysis of the Unfolded Protein Response in Arabidopsis thaliana. Methods Mol Biol. 2022;2378:279-289. doi: 10.1007/978-1-0716-1732-8_18.
• DK Ko, F Brandizzi. Advanced genomics identifies growth effectors for proteotoxic ER stress recovery in Arabidopsis thaliana. Commun Biol. 2022 Jan 11;5(1):16. doi: 10.1038/s42003-021-02964-8.
• BA McKinley, M Thakran, S Zemelis-Durfee, X Huang, F Brandizzi, WL Rooney, SD Mansfield, JE Mullet. Transcriptional regulation of the raffinose family oligosaccharides pathway in Sorghum bicolor reveals potential roles in leaf sucrose transport and stem sucrose accumulation. Front Plant Sci. 2022 Dec 9;13:1062264. doi: 10.3389/fpls.2022.1062264. eCollection 2022.
• AJ McGinness, J Schoberer, C Pain, F Brandizzi, V Kriechbaumer. On the nature of the plant ER exit sites. Front Plant Sci. 2022 Oct 7;13:1010569. doi: 10.3389/fpls.2022.1010569. eCollection 2022.
• M Fan, JK Jensen, S Zemelis‐Durfee, SJ Kim, JY Chan, CM Beaudry, F Brandizzi, CG Wilkerson. Disruption of Brachypodium lichenase alters metabolism of mixed‐linkage glucan and starch. Plant J. 2022 Feb;109(4):927-939. doi: 10.1111/tpj.15603. Epub 2021 Dec 17.

2021

• E Angelos, F Brandizzi. The UPR Regulator IRE1 Promotes Balanced Organ Development by Restricting TOR‐Dependent Control of Cellular Differentiation in Arabidopsis. The Plant Journal, December 2021
• Mingzhu Fan, Jacob K. Jensen, Starla Zemelis-Durfee, Sang-Jin Kim, Jia-Yi Chan, Claudia M. Beaudry, Federica Brandizzi, Curtis G. Wilkerson Disruption of Brachypodium Lichenase Alters Metabolism of Mixed-linkage Glucan and Starch. The Plant Journal, November 2021, https://doi.org/10.1111/tpj.15603 
• F Brandizzi. Adding to the understanding of grain filling processes through multiomics: high-throughput proteome and metabolome come into play The Plant Journal, August 2021, Volume 107 Issue 3, p. 667-668
• SJ Kim, F Brandizzi. Advances in Cell Wall Matrix Research With a Focus on Mixed Linkage Glucan Plant and Cell Physiology, July 2021
• F Brandizzi. Maintaining the structural and functional homeostasis of the plant endoplasmic reticulum Developmental Cell, April 2021, Volume 56 Issue 7, p. 919-932

2020

• E Angelos, DK Ko, S Zemelis-Durfee, F Brandizzi. Relevance of the Unfolded Protein Response to Spaceflight-Induced Transcriptional Reprogramming in Arabidopsis. Astrobiology. 2020 Dec 15. Online ahead of print.
• V Kriechbaumer, F Brandizzi. The plant endoplasmic reticulum: an organized chaos of tubules and sheets with multiple functions. J Microsc. 2020 Nov;280(2):122-133.
• J Oliver, M Fan, B McKinley, S Zemelis‐Durfee, F Brandizzi, C Wilkerson, JE Mullet. The AGCVIII kinase Dw2 modulates cell proliferation, endomembrane trafficking, and MLG/xylan cell wall localization in elongating stem internodes of Sorghum bicolor. Plant J. 2020 Nov 19. Online ahead of print.
• GM Burkart, F Brandizzi. A Tour of TOR Complex Signaling in Plants. Trends Biochem Sci. 2020 Dec 9:S0968-0004(20)30275-9.
• AL Preiser, A Banerjee, SE Weise, L Renna, F Brandizzi, TD Sharkey. Phosphoglucoisomerase Is an Important Regulatory Enzyme in Partitioning Carbon out of the Calvin-Benson Cycle. Front. Plant Sci., 10 Dec 2020
• DK Ko, F Brandizzi. A temporal hierarchy underpins the transcription factor‐DNA interactome of the maize UPR. Plant J. 2020 Oct 24. Online ahead of print.
• DD Bhandari, F Brandizzi. Plant endomembranes and cytoskeleton: moving targets in immunity. Curr Opin Plant Biol. 2020 Oct 21;58:8-16. Online ahead of print.
• SJ Kim, B Chandrasekar, AC Rea, L Danhof, S Zemelis-Durfee, N Thrower, ZS Shepard, M Pauly, F Brandizzi, K Keegstra. The synthesis of xyloglucan, an abundant plant cell wall polysaccharide, requires CSLC function. Proc Natl Acad Sci U S A. 2020 Jul 31:202007245
• DK Ko, F Brandizzi. Network-based approaches for understanding gene regulation and function in plants. Plant J. 2020 Jul 27. Online ahead of print.
• F Brandizzi. The Plant Endoplasmic Reticulum: A Dynamic Network of Interconnected Membranes. Microsc. Microanal. 26(S2), 136-136. 
• F Brandizzi. To grow or not to grow …. Plant J. 2020 Jul;103(2):479-480.
• P Fan, P Wang, YR Lou, BJ Leong, BM Moore, CA Schenck, R Combs, P Cao, Brandizzi F, Shiu SH, Last RL. Evolution of a plant gene cluster in Solanaceae and emergence of metabolic diversity. Elife. 2020 Jul 2;9:e56717
• L Renna, F Brandizzi The mysterious life of the plant trans‐Golgi Network: advances and tools to understand it better. J Microsc. 2020 01 March 2020
• A Zienkiewicz, K Zienkiewicz, E Poliner, JA Pulman, ZY Du, G Stefano, CH Tsai, PJ Horn, I Feussner, EM Farre, K Childs, F Brandizzi, C Benning The Microalga Nannochloropsis during transition from quiescence to autotrophy in response to nitrogen availability. Plant Physiol. 2020 Feb;182(2):819-839.
• N Pastor-Cantizano, DK Ko, E Angelos, Y Pu, F Brandizzi Functional Diversification of ER Stress Responses in Arabidopsis. Trends Biochem Sci. 2020 Feb;45(2):123-136.
• G Stefano, F Brandizzi. Analysis of Endoplasmic Reticulum–Endosome Association Using Live-Cell Imaging in Plant Cells. Methods Mol Biol. 2020;2177:23-33.

2019

• P Cao, SJ Kim, A Xing, CA Schenck, L Liu, N Jiang, J Wang, RL Last, F Brandizzi Homeostasis of branched-chain amino acids is critical for the activity of TOR signaling in Arabidopsis. Elife. 2019 Dec 6;8. pii: e50747 [Epub ahead of print]
• *Y Pu, *C Ruberti, ER Angelos, F Brandizzi AtIRE1C, an unconventional isoform of the UPR master regulator AtIRE1, is functionally associated with AtIRE1B in Arabidopsis gametogenesis. Plant Direct. 2019 Nov 28 [Epub ahead of print]. *Equally contributed
• EM Neill, MCR Byrd, T Billman, F Brandizzi, AE Stapleton Plant growth regulators interact with elevated temperature to alter heat stress signaling via the Unfolded Protein Response in maize. Sci Rep. 2019 Jul 17;9(1):10392. 
• F Brandizzi Divide, expand, differentiate–new insights on plant organ growth through cytokinin signaling. Plant J. 2019 Mar;97(5):803-804.
• F Barozzi, P Papadia, G Stefano, L Renna, F Brandizzi, D Migoni, FP Fanizzi, G Piro, GP Di Sansebastiano. Variation in Membrane Trafficking Linked to SNARE AtSYP51 Interaction With Aquaporin NIP1;1. Front Plant Sci. 2019 Jan 9;9:1949. doi: 10.3389/fpls.2018.01949. eCollection 2018.

2018

• L Renna, G Stefano, E Slabaugh, C Wormsbaecher, A Sulpizio, K Zienkiewicz, F Brandizzi TGNap1 is required for microtubule-dependent homeostasis of a subpopulation of the plant trans-Golgi network. Nat Commun. 2018 Dec 14;9(1):5313.
• L Sweetlove, F Brandizzi The Plant Journal has introduced optional double‐blind peer review. Plant J. 2018 Oct;96(2):247-248.
• YS Lai, G Stefano, S Zemelis-Durfee, C Ruberti, L Gibbons, F Brandizzi Systemic signaling contributes to the unfolded protein response of the plant endoplasmic reticulum. Nat Commun. 2018 Sep 25;9:3918. 
• M Fan, K Herburger, JK Jensen, S Zemelis-Durfee, F Brandizzi, SC Fry, CG Wilkerson A Trihelix Family Transcription Factor is Associated with Key Genes in Mixed-linkage Glucan Accumulation. Plant Physiol. 2018 Sep 17. pii: pp.00978.2018. 
• E Angelos and F Brandizzi NADPH Oxidase activity is required for ER stress survival in plants. Plant J. 2018 Sep 15. [Epub ahead of print]
• F Brandizzi Rabs: targets in the plant‐pathogen battlefield. Plant J. 2018 Jul;95(2):185-186.
• YS Lai, L Renna, J Yarema, C Ruberti, SY He, F Brandizzi Salicylic acid-independent role of NPR1 is required for protection from proteotoxic stress in the plant endoplasmic reticulum. Proc Natl Acad Sci U S A. 2018 May 29;115(22):E5203-E5212.
• G Stefano, L Renna, C Wormsbaecher, J Gamble, K Zienkiewicz, F Brandizzi Plant Endocytosis Requires the ER Membrane-Anchored Proteins VAP27-1 and VAP27-3. Cell Rep. 2018 May 22;23(8):2299-2307.
• SJ Kim, S Zemelis‐Durfee, JK Jensen, CG Wilkerson, K Keegstra, F Brandizzi In the grass species Brachypodium distachyon, the production of mixed‐linkage (1,3;1,4)‐β‐glucan (MLG) occurs in the Golgi apparatus. Plant J. 2018 Mar;93(6):1062-1075.
• G Stefano, L Renna, F Brandizzi Plant Cell Vacuoles: Staining and Fluorescent Probes. Methods Mol Biol. 2018;1789:55-63.
• L Renna, G Stefano, F Brandizzi Live Cell Imaging and Confocal Microscopy. Methods Mol Biol. 2018;1789:117-130.
• R Srivastava, Z Li, G Russo, J Tang, R Bi, U Muppirala, S Chudalayandi, A Severin, M He, SI Vaitkevicius, CJ Lawrence-Dill, P Liu, AE Stapleton, DC Bassham, F Brandizzi, SH Howell Response to Persistent ER Stress in Plants: a Multiphasic Process that Transitions Cells from Prosurvival Activities to Cell Death. Plant Cell. 2018 Jun;30(6):1220-1242.
• C Ruberti, YS Lai, F Brandizzi Recovery from temporary endoplasmic reticulum stress in plants relies on the tissue-specific and largely independent roles of bZIP28 and bZIP60, as well as an antagonizing function of BAX-Inhibitor 1 upon the pro-adaptive signaling mediated by bZIP28. Plant J. 2018 Jan;93(1):155-165.
• C Ruberti, F Brandizzi Unfolded Protein Response in Arabidopsis. Methods Mol Biol. 2018;1691:231-238.
• G Stefano, F Brandizzi Advances in plant ER architecture and dynamics. Plant Physiol. 2018 Jan;176(1):178-186.

2017

• F Brandizzi Transport from the endoplasmic reticulum to the Golgi in plants: Where are we now? Semin Cell Dev Biol. 2018 Aug;80:94-105.
• SJ Kim, S Zemelis-Durfee, C Wilkerson, F Brandizzi In Brachypodium a complex signaling is actuated to protect cells from proteotoxic stress and facilitate seed filling. Planta. 2017 Jul;246(1):75-89.
• E Angelos, C Ruberti, SJ Kim, F Brandizzi Maintaining the factory: the roles of the unfolded protein response in cellular homeostasis in plants. Plant J. 2017 May;90(4):671-682.
• Z Meng, C Ruberti, Z Gong, F Brandizzi CPR 5 modulates salicylic acid and the unfolded protein response to manage tradeoffs between plant growth and stress responses. Plant J. 2017 Feb;89(3):486-501.
• YS Kim, C An, S Park, SJ Gilmour, L Wang, L Renna, F Brandizzi, R Grumet, M Thomashow CAMTA-mediated regulation of salicylic acid immunity pathway genes in Arabidopsis exposed to low temperature and pathogen infection. Plant Cell. 2017 Oct;29(10):2465-2477.

2016

• P Cao, L Renna, G Stefano, F Brandizzi SYP73 Anchors the ER to the Actin Cytoskeleton for Maintenance of ER Integrity and Streaming in Arabidopsis. Curr Biol. 2016 Dec 5;26(23):3245-3254
• SJ Kim, F Brandizzi The plant secretory pathway for the trafficking of cell wall polysaccharides and glycoproteins. Glycobiology. 2016 Sep;26(9):940-949.
• JH Kang, ML Campos, S Zemelis-Durfee, JM Al-Haddad, AD Jones, FW Telewski, F Brandizzi, GA Howe Molecular cloning of the tomato Hairless gene implicates actin dynamics in trichome-mediated defense and mechanical properties of stem tissue. J Exp Bot. 2016 Oct;67(18):5313-5324.
• RM Larkin, G Stefano, ME Ruckle, AK Stavoe, CA Sinkler, F Brandizzi, CM Malmstrom, KW Osteryoung REDUCED CHLOROPLAST COVERAGE genes from Arabidopsis thaliana help to establish the size of the chloroplast compartment. Proc Natl Acad Sci U S A. 2016 Feb 23;113(8):E1116-25.
• SM Weraduwage, SJ Kim, L Renna, FC Anozie, TD Sharkey, F Brandizzi Pectin Methylesterification Impacts the Relationship Between Photosynthesis and Plant Growth in Arabidopsis thaliana. Plant Physiol. 2016 Jun;171(2):833-48.
• JA Sparks, T Kwon, L Renna, F Liao, F Brandizzi, EB Blancaflor HLB1 is a novel tetratricopeptide repeat domain-containing protein that operates at the intersection of the exocytic and endocytic pathways at the TGN/EE in Arabidopsis. Plant Cell. 2016 Mar;28(3):746-69.

2015

• G Stefano, L Renna, YS Lai, E Slabaugh, N Mannino, RA Buono, MS Otegui, F Brandizzi ER network homeostasis is critical for plant endosome streaming and endocytosis. Cell Discov. 2015 Nov 17;1:15033.
• C Ruberti, SJ Kim, G Stefano, F Brandizzi Unfolded protein response in plants: one master, many questions. Curr Opin Plant Biol. 2015 Oct;27:59-66.
• DG Robinson, F Brandizzi, C Hawes, A Nakano Vesicles versus tubes: is endoplasmic reticulum-Golgi transport in plants fundamentally different from other eukaryotes? Plant Physiol. 2015 Jun;168(2):393-406.
• L Zhang, H Chen, F Brandizzi, J Verchot, A Wang The UPR branch IRE1-bZIP60 in plants plays an essential role in viral infection and is complementary to the only UPR pathway in yeast. PLoS Genet. 2015 Apr 15;11(4):e1005164.
• SJ Kim, MA Held, S Zemelis, C Wilkerson, F Brandizzi CGR2 and CGR3 have critical overlapping roles in pectin methylesterification and plant growth in Arabidopsis thaliana. Plant J. 2015 Apr;82(2):208-20.
• SJ Kim, S Zemelis, K Keegstra, F Brandizzi The cytoplasmic localization of the catalytic site of CSLF 6 supports a channeling model for the biosynthesis of mixed‐linkage glucan. Plant J. 2015 Feb;81(4):537-47.
• G Stefano, L Renna, F Brandizzi BiFC for protein–protein interactions and protein topology: discussing an integrative approach for an old technique. Methods Mol Biol. 2015;1242:173-82.
• H Ueda, E Yokota, K Kuwata, N Kutsuna, S Mano, T Shimada, K Tamura, G Stefano, Y Fukao, F Brandizzi, T Shimmen, M Nishimura, I Hara-Nishimura Phosphorylation of the C-terminus of RHD3 has a critical role in homotypic ER membrane fusion in Arabidopsis. Plant Physiol. 2016 Feb;170(2):867-80.
• Y Kong, MJ Peña, L Renna, U Avic, S Pattathil, ST Tuomivaara, X Li, WD Reiter, F Brandizzi, MG Hahn, AG Darvill, WS York, M O'Neill Galactose-depleted xyloglucan is dysfunctional and leads to dwarfism in Arabidopsis. Plant Physiol. 2015 Apr;167(4):1296-306.

2014

• G Stefano, C Hawes, F Brandizzi ER–the key to the highway. Curr Opin Plant Biol. 2014 Dec;22:30-38.
• D Barajas, K Xu, IF de Castro Martín, Z Sasvari, F Brandizzi, C Risco, PD Nagy Co-opted oxysterol-binding ORP and VAP proteins channel sterols to RNA virus replication sites via membrane contact sites. PLoS Pathog. 2014 Oct 16;10(10):e1004388.
• AJ Koo, C Thireault, S Zemelis, AN Poudel, T Zhang, N Kitaoka, F Brandizzi, H Matsuura, GA Howe Endoplasmic reticulum-associated inactivation of the hormone jasmonoyl-L-isoleucine by multiple members of the cytochrome P450 94 family in Arabidopsis. J Biol Chem. 2014 Oct 24;289(43):29728-38.
• L Maneta-Peyret, YS Lai, G Stefano, L Fouillen, F Brandizzi, P Moreau Phospholipid biosynthesis increases in RHD3-defective mutants. Plant Signal Behav. 2014 Jul 14;9.
• F Brandizzi, L Frigerio, SH Howell, P Schäfer Endoplasmic reticulum—shape and function in stress translation. Front Plant Sci. 2014 Sep 1;5:425.
• YS Lai, G Stefano, F Brandizzi ER stress signaling requires RHD3, a functionally conserved ER-shaping GTPase. J Cell Sci. 2014 Aug 1;127(Pt 15):3227-32.
• F Brandizzi, C Barlowe ER-Golgi transport: authors' response. Nat Rev Mol Cell Biol. 2014 Mar;15(3):1. 
• C Ruberti, F Brandizzi Conserved and plant-unique strategies for overcoming endoplasmic reticulum stress. Front Plant Sci. 2014 Feb 26;5:69.
• SJ Kim, F Brandizzi The plant secretory pathway: an essential factory for building the plant cell wall. Plant Cell Physiol. 2014 Apr;55(4):687-93.
• T Savchenko, VA Kolla, CQ Wang, Z Nasai, DR Hicks, B Phadungchob, WE Chehab, F Brandizzi, J Froehlich, K Dehesh Functional convergence of oxylipin and abscisic acid pathways controls stomatal closure in response to drought. Plant Physiol. 2014 Mar;164(3):1151-60.
• G Stefano, L Renna, F Brandizzi The endoplasmic reticulum exerts control over organelle streaming during cell expansion. Cell Sci. 2014 Mar 1;127(Pt 5):947-53.
• T Savchenko, V Kolla, CQ Wang, Z Nasafi, D Hicks, B Phadungchob, W Chehab, F Brandizzi, J Froehlich, K Dehesh Functional convergence of oxylipin and ABA pathways controls stomatal closure in response to drought. Plant Physiol. 2014 Mar;164(3):1151-60.
• G Stefano, F Brandizzi Unique and conserved features of the plant ER-shaping GTPase RHD3 Cell Logist. 2014 Jan 1;4(1):e28217.
• J Rodriguez-López, C Martínez-Centeno, A Padmanaban, G Guillén, JE Olivares, G Stefano, F Lledías, F Ramos, SA Ghabrial, F Brandizzi, M Rocha-Sosa, C Díaz-Camino, F Sanchez Nodulin 22, a novel small heat-shock protein of the endoplasmic reticulum, is linked to the unfolded protein response in common bean Mol Plant Microbe Interact. 2014 Jan;27(1):18-29.
• Y Chen, K Aung, J Rolčík, K Walicki, J Friml, F Brandizzi Inter‐regulation of the unfolded protein response and auxin signaling Plant J. 2014 Jan;77(1):97-107.

2013

• J Takagi, L Renna, H Takahashi, Y Koumoto, K Tamura, G Stefano, Y Fukao, M Kondo, M Nishimura, T Shimada, F Brandizzi, I Hara-Nishimura MAIGO5 functions in protein export from Golgi-associated endoplasmic reticulum exit sites in Arabidopsis Plant Cell. 2013 Nov;25(11):4658-75.
• Y Chen, F Brandizzi IRE1: ER stress sensor and cell fate executor Trends Cell Biol. 2013 Nov;23(11):547-55.
• JA McNew, H Sondermann, T Lee, M Stern, F Brandizzi GTP-dependent membrane fusion Annu Rev Cell Dev Biol. 2013;29:529-50.
• P Mehrshahi, G Stefano, JM Andaloro, F Brandizzi, JE Froehlich, D DellaPenna Transorganellar complementation redefines the biochemical continuity of endoplasmic reticulum and chloroplasts Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):12126-31.
• F Brandizzi, GO Wasteneys Cytoskeleton‐dependent endomembrane organization in plant cells: an emerging role for microtubules Plant J. 2013 Jul;75(2):339-49.
• GO Wasteneys, F Brandizzi A Glorious Half‐Century of Microtubules Plant J. 2013 Jul;75(2):185-8.
• F Brandizzi, C Barlowe Organization of the ER–Golgi interface for membrane traffic control Nat Rev Mol Cell Biol. 2013 Jun;14(6):382-92.
• W Du, K Tamura, G Stefano, F Brandizzi The integrity of the plant Golgi apparatus depends on cell growth-controlled activity of GNL1 Mol Plant. 2013 May;6(3):905-15.
• L Renna, G Stefano, W Majeran, C Micalella, T Meinnel, C Giglione, F Brandizzi Golgi traffic and integrity depend on N-myristoyl transferase-1 in Arabidopsis Plant Cell. 2013 May;25(5):1756-73.
• GD Moghe, MD Lehti-Shiu, AE Seddon, S Yin, Y Chen, P Juntawong, F Brandizzi, J Bailey-Serres, S Shiu Characteristics and Signiicance of Intergenic Polyadenylated RNA Transcription in Arabidopsis Plant Physiol. 2013 Jan;161(1):210-24.
• G Stefano, A Osterrieder, C Hawes, F Brandizzi Endomembrane and Golgi traffic in plant cells Methods Cell Biol. 2013;118:69-83.
• JD Matakas, V Balan, GD Carson IV, F Brandizzi Plant-produced recombinant human interleukin-2 and its activity against splenic CD4+ T-cells Int. J. LifeSc. Bt & Pharm. Res. 2013;2;193-203.
• Y Chen, F Brandizzi Analysis of unfolded protein response in Arabidopsis Methods Mol Biol. 2013;1043:73-80.

2012

• YJ Tan, WH Wang, Y Zheng, J Dong, G Stefano, F Brandizzi, RM Garavito, GE Reid, ML Bruening Limited proteolysis via millisecond digestions in protease-modified membranes Anal Chem. 2012 Oct 2;84(19):8357-63.
• E Ruiz-May, SJ Kim, F Brandizzi, JKC Rose The secreted plant N-glycoproteome and associated secretory pathways Front Plant Sci. 2012 Jun 6;3:117.
• R Srivastava, Y Chen, Y Deng, F Brandizzi, SH Howell Elements proximal to and within the transmembrane domain mediate the organelle‐to‐organelle movement of bZIP28 under ER stress conditions Plant J. 2012 Jun;70(6):1033-42.
• A Aharoni, F Brandizzi High‐Resolution Measurements in Plant Biology Plant J. 2012 Apr;70(1):1-4.
• I Sparkes, F Brandizzi Fluorescent protein‐based technologies: shedding new light on the plant endomembrane system Plant J. 2012 Apr;70(1):96-107.
• G Stefano, L Renna, T Moss, JA McNew, F Brandizzi In Arabidopsis, the spatial and dynamic organization of the endoplasmic reticulum and Golgi apparatus is influenced by the integrity of the C-terminal domain of RHD3, a non-essential GTPase Plant J. 2012 Mar;69(6):957-66.
• AA Moreno, MS Mukhtar, F Blanco, JL Boatwright, I Moreno, MR Jordan, Y Chen, F Brandizzi, X Dong, A Orellana, KM Pajerowska-Mukhtar IRE1/bZIP60-mediated unfolded protein response plays distinct roles in plant immunity and abiotic stress responses PLoS One. 2012;7(2):e31944.
• SJ Kim, F Brandizzi News and views into the SNARE complexity in Arabidopsis Front Plant Sci. 2012 Feb 10;3:28
• FKH Breuers, A Bräutigam, S Geimer, UY Welzel, G Stefano, L Renna, F Brandizzi, APM Weber Dynamic remodeling of the plastid envelope membranes–a tool for chloroplast envelope in vivo localizations Front Plant Sci. 2012 Jan 23;3:7.
• Q Ma, W Du, F Brandizzi, JJ Giovannoni, CS Barry Differential control of ethylene responses by GREEN-RIPE and GREEN-RIPE LIKE1 provides evidence for distinct ethylene signaling modules in tomato Plant Physiol. 2012 Dec;160(4):1968-84.
• Y Chen, F Brandizzi AtIRE1A/AtIRE1B and AGB1 independently control two essential unfolded protein response pathways in Arabidopsis Plant J. 2012 Jan;69(2):266-77.
• G Stefano, L Renna, F Brandizzi Fluorescence-microscopy screening and next-generation sequencing: useful tools for the identification of genes involved in organelle integrity J Vis Exp. 2012 Apr 13;(62).

2011

• MA Held, E Be, S Zemelis, S Withers, C Wilkerson, F Brandizzi CGR3: a Golgi-localized protein influencing homogalacturonan methylesterification Mol Plant. 2011 Sep;4(5):832-44.
• E Slabaugh, F Brandizzi Membrane-tethered transcription factors provide a connection between stress response and developmental pathways Plant Signal Behav. 2011 Aug;6(8):1210-1.
• E Slabaugh, M Held, F Brandizzi Control of root hair development in Arabidopsis thaliana by an endoplasmic reticulum anchored member of the R2R3‐MYB transcription factor family Plant J. 2011 Aug;67(3):395-405.
• R Conger, Y Chen, S Fornaciari, C Faso, MA Held, L Renna, F Brandizzi Evidence for the involvement of the Arabidopsis SEC24A in male transmission J Exp Bot. 2011 Oct;62(14):4917-26. 
• M Tian, J Win, E Savory, A Burkhardt, M Held, F Brandizzi, B Day 454 Genome Sequencing of Pseudoperonospora cubensis Reveals Effector Proteins with a QXLR Translocation Motif Mol Plant Microbe Interact. 2011 May;24(5):543-53. 
• F Brandizzi, R Mullen Organelle biogenesis and communication in plant cells Plant Cell Rep. 2011 Feb;30(2):135-6.
• F Brandizzi Is There a COPII‐Mediated Membrane Traffic in Chloroplasts? Traffic. 2011 Jan;12(1):9-11.
• J Chen, G Stefano, F Brandizzi, H Zheng Arabidopsis RHD3 mediates the generation of the tubular ER network and is required for Golgi distribution and motility in plant cells J Cell Sci. 2011 Jul 1;124(Pt 13):2241-52.

2010

• G Stefano, L Renna, M Rossi, E Azzarello, S Pollastri, F Brandizzi, F Baluska, S Mancuso AGD5 is a GTPase‐activating protein at the trans‐Golgi network Plant J. 2010 Dec;64(5):790-9.
• J Davis, F Brandizzi, AH Liepman, K Keegstra Arabidopsis mannan synthase CSLA9 and glucan synthase CSLC4 have opposite orientations in the Golgi membrane Plant J. 2010 Dec;64(6):1028-37. 
• L Marti, G Stefano, K Tamura, C Hawes, L Renna, MA Held, F Brandizzi A missense mutation in the vacuolar protein GOLD36 causes organizational defects in the ER and aberrant protein trafficking in the plant secretory pathway Plant J. 2010 Sep;63(6):901-13.
• L Marti, S Fornaciari, L Renna, G Stefano, F Brandizzi COPII-mediated traffic in plants Trends Plant Sci. 2010 Sep;15(9):522-8.
• F Reyes, G León, M Donoso, F Brandizzí, APM Weber, A Orellana The nucleotide sugar transporters AtUTr1 and AtUTr3 are required for the incorporation of UDP-glucose into the endoplasmic reticulum, are essential for pollen development and are needed for embryo sac progress in Arabidopsis thaliana Plant J. 2010 Feb 1;61(3):423-35. 

2009

• C Faso, A Boulaflous, F Brandizzi The plant Golgi apparatus: last 10 years of answered and open questions FEBS Lett. 2009 Dec 3;583(23):3752-7. 
• C Faso, YN Chen, K Tamura, M Held, S Zemelis, L Marti, RS Saravanan, E Hummel, L Kung, E Miller, C Hawes, F Brandizzi A missense mutation in the Arabidopsis COPII coat protein Sec24A induces the formation of clusters of the endoplasmic reticulum and Golgi apparatus Plant Cell. 2009 Nov;21(11):3655-71.
• S Melser, V Wattelet-Boyer, F Brandizzi, P Moreau Blocking ER export of the Golgi SNARE SYP31 affects plant growth Plant Signal Behav. 2009 Oct;4(10):962-4.
• L Chatre, V Wattelet-Boyer, S Melser, L Maneta-Peyret, F Brandizzi, P Moreau A novel di-acidic motif facilitates ER export of the syntaxin SYP31 J Exp Bot. 2009;60(11):3157-65.
• RS Saravanan, E Slabaugh, VR Singh, LJ Lapidus, T Haas, F Brandizzi The targeting of the oxysterol‐binding protein ORP3a to the endoplasmic reticulum relies on the plant VAP33 homolog PVA12 Plant J. 2009 Jun;58(5):817-30.
• SL Hanton, LA Matheson, L Chatre, F Brandizzi Dynamic organization of COPII coat proteins at endoplasmic reticulum export sites in plant cells Plant J. 2009 Mar;57(6):963-74.
• T Brach, S Soyk, C Müller, G Hinz, R Hell, F Brandizzi, AJ Meyer Non‐invasive topology analysis of membrane proteins in the secretory pathway Plant J. 2009 Feb;57(3):534-41.
• L Chatre, LA Matheson, AS Jack, SL Hanton, F Brandizzi Efficient mitochondrial targeting relies on co-operation of multiple protein signals in plants J Exp Bot. 2009;60(3):741-9. 

2008

• C Sieben, M Mikosch, F Brandizzi, U Homann Interaction of the K⁺‐channel KAT1 with the coat protein complex II coat component Sec24 depends on a di‐acidic endoplasmic reticulum export motif Plant J. 2008 Dec;56(6):997-1006. 
• YN Chen, E Slabaugh, F Brandizzi Membrane-tethered transcription factors in Arabidopsis thaliana: novel regulators in stress response and development Curr Opin Plant Biol. 2008 Dec;11(6):695-701.
• D Ehrhardt, F Brandizzi Cell biology. Editorial overview Curr Opin Plant Biol. 2008 Dec;11(6):575-6.
• H Gao, F Brandizzi, C Benning, RM Larkin A membrane-tethered transcription factor defines a branch of the heat stress response in Arabidopsis thaliana Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16398-403.
• A Boulaflous, C Faso, F Brandizzi Deciphering the Golgi apparatus: from imaging to genes Traffic. 2008 Sep;9(10):1613-7.
• MA Held, A Boulaflous, F Brandizzi Advances in fluorescent protein-based imaging for the analysis of plant endomembranes Plant Physiol. 2008 Aug;147(4):1469-81.
• SL Hanton, L Chatre, LA Matheson, M Rossi, MA Held, F Brandizzi Plant Sar1 isoforms with near-identical protein sequences exhibit different localisations and effects on secretion Plant Mol Biol. 2008 Jun;67(3):283-94.
• LA Matheson, SS Suri, SL Hanton, L Chatre, F Brandizzi Correct targeting of plant ARF GTPases relies on distinct protein domains Traffic. 2008 Jan;9(1):103-20.
• DC Bassham, F Brandizzi, MS Otegui, AA Sanderfoot The secretory system of Arabidopsis Arabidopsis Book. 2008;6:e0116.
• F Brandizzi Protein export from the plant endoplasmic reticulum to the Golgi apparatus Comparative Biochemistry and Physiology, Part A 3 (150), S200-S201
• L Chatre, V WatteletBoyer, S Melser, P Moreau, F Brandizzi Golgi targeting of SYP31: Requirement of a di-acidic motif Comparative Biochemistry and Physiology, Part A 3 (150), S201

2007

• SL Hanton, LA Matheson, L Chatre, M Rossi, F Brandizzi Post-Golgi protein traffic in the plant secretory pathway Plant Cell Rep. 2007 Sep;26(9):1431-8.
• E Fouquaert, SL Hanton, F Brandizzi, WJ Peumans, EJM Van Damme Localization and topogenesis studies of cytoplasmic and vacuolar homologs of the Galanthus nivalis agglutinin Plant Cell Physiol. 2007 Jul;48(7):1010-21.
• LA Matheson, SL Hanton, M Rossi, M Latijnhouwers, G Stefano, L Renna, F Brandizzi Multiple roles of ADP-ribosylation factor 1 in plant cells include spatially regulated recruitment of coatomer and elements of the Golgi matrix Plant Physiol. 2007 Apr;143(4):1615-27.
• SL Hanton, L Chatre, L Renna, LA Matheson, F Brandizzi De novo formation of plant endoplasmic reticulum export sites is membrane cargo induced and signal mediated Plant Physiol. 2007 Apr;143(4):1640-50.
• SL Hanton, LA Matheson, L Chatre, F Brandizzi The Golgi Apparatus–A Key Organelle in the Plant Secretory Pathway Functional Plant Science and Biotechnology 1 (1), 69-76
• SL Hanton, LA Matheson, F Brandizzi Studying protein export from the endoplasmic reticulum in plants Methods Mol Biol. 2007;390:297-308.

2006

• LA Matheson, SL Hanton, F Brandizzi Traffic between the plant endoplasmic reticulum and Golgi apparatus: to the Golgi and beyond Curr Opin Plant Biol. 2006 Dec;9(6):601-9.
• P Moreau, F Brandizzi, S Hanton, L Chatre, S Melser, C Hawes, B Satiat-Jeunemaitre The plant ER–Golgi interface: a highly structured and dynamic membrane complex J Exp Bot. 2007;58(1):49-64.
• Y Zhou, H Niu, F Brandizzi, LC Fowke, H Wang Molecular control of nuclear and subnuclear targeting of the plant CDK inhibitor ICK1 and ICK1-mediated nuclear transport of CDKA Plant Mol Biol. 2006 Sep;62(1-2):261-78.
• SL Hanton, LA Matheson, F Brandizzi Seeking a way out: export of proteins from the plant endoplasmic reticulum Trends Plant Sci. 2006 Jul;11(7):335-43.
• G Stefano, L Renna, SL Hanton, L Chatre, TA Haas, F Brandizzi ARL1 plays a role in the binding of the GRIP domain of a peripheral matrix protein to the Golgi apparatus in plant cells Plant Mol Biol. 2006 Jun;61(3):431-49.
• TPJ Dunkley, S Hester, IP Shadforth, J Runions, T Weimar, SL Hanton, JL Griffin, C Bessant, F Brandizzi, C Hawes, RB Watson, P Dupree, KS Lilley Mapping the Arabidopsis organelle proteome Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6518-23.
• SL Hanton, F Brandizzi Protein transport in the plant secretory pathway Canadian Journal of Botany, 2006, 84(4): 523-530.
• G Stefano, L Renna, L Chatre, SL Hanton, P Moreau, C Hawes, F Brandizzi In tobacco leaf epidermal cells, the integrity of protein export from the endoplasmic reticulum and of ER export sites depends on active COPI machinery Plant J. 2006 Apr;46(1):95-110.
• SL Hanton, F Brandizzi Fluorescent proteins as markers in the plant secretory pathway Microsc Res Tech. 2006 Mar;69(3):152-9.

2005

• F Brandizzi, S Hanton, L Renna, L Bortolotti, G Stefano Dynamics of the endoplasmic reticulum and Golgi apparatus in live plant cells Biochemistry and Cell Biology. Vol. 83, Iss. 6: 781.
• L Chatre, F Brandizzi, A Hocquellet, C Hawes, P Moreau Sec22 and Memb11 are v-SNAREs of the anterograde endoplasmic reticulum-Golgi pathway in tobacco leaf epidermal cells Plant Physiol. 2005 Nov;139(3):1244-54.
• SL Hanton, L Renna, LE Bortolotti, L Chatre, G Stefano, F Brandizzi Diacidic motifs influence the export of transmembrane proteins from the endoplasmic reticulum in plant cells Plant Cell. 2005 Nov;17(11):3081-93.
• S Rutherford, F Brandizzi, H Townley, J Craft, Y Wang, I Jepson, A Martinez, I Moore Improved transcriptional activators and their use in mis‐expression traps in Arabidopsis Plant J. 2005 Sep;43(5):769-88.
• L Renna, SL Hanton, G Stefano, L Bortolotti, V Misra, F Brandizzi Identification and characterization of AtCASP, a plant transmembrane Golgi matrix protein Plant Mol Biol. 2005 May;58(1):109-22.
• SL Hanton, LE Bortolotti, L Renna, G Stefano, F Brandizzi Crossing the divide–transport between the endoplasmic reticulum and Golgi apparatus in plants Traffic. 2005 Apr;6(4):267-77.
• LP Luis, JP Taylor, JL Hadlington, SL Hanton, CJ Snowden, SJ Fox, O Foresti, F Brandizzi, J Denecke Receptor salvage from the prevacuolar compartment is essential for efficient vacuolar protein targeting Plant Cell. 2005 Jan;17(1):132-48.
• MH Noyan-Ashraf, F Brandizzi, BH Juurlink. Constitutive nuclear localization of activated caspase 3 in subpopulations of the astroglial family of cells Glia. 2005 Mar;49(4):588-93.

2004

• AM Kotzer, F Brandizzi, U Neumann, N Paris, I Moore, C Hawes AtRabF2b (Ara7) acts on the vacuolar trafficking pathway in tobacco leaf epidermal cells J Cell Sci. 2004 Dec 15;117(Pt 26):6377-89.
• MG Handford, F Sicilia, F Brandizzi, JH Chung, P Dupree Arabidopsis thaliana expresses multiple Golgi-localised nucleotide-sugar transporters related to GONST1 Mol Genet Genomics. 2004 Nov;272(4):397-410.
• F Brandizzi, SL Irons, DE Evans The plant nuclear envelope: new prospects for a poorly understood structure New Phytol. 163(2):227-246. 
• LP Luis, EL Snapp, J Denecke, J Lippincott-Schwartz, C Hawes, F Brandizzi Endoplasmic reticulum export sites and Golgi bodies behave as single mobile secretory units in plant cells Plant Cell. 2004 Jul;16(7):1753-71.
• F Brandizzi, SL Irons, J Johansen, A Kotzer, U Neumann GFP is the way to glow: bioimaging of the plant endomembrane system J Microsc. 2004 May;214(Pt 2):138-58.
• F Brandizzi, C Hawes A long and winding road: symposium on membrane trafficking in plants EMBO Rep. 2004 Mar;5(3):245-9. 
• C Hawes, F Brandizzi The Golgi apparatus–still causing problems after all these years! Cell Mol Life Sci. 2004 Jan;61(2):131-2.
• TH Ward, F Brandizzi Dynamics of proteins in Golgi membranes: comparisons between mammalian and plant cells highlighted by photobleaching techniques Cell Mol Life Sci. 2004 Jan;61(2):172-85.
• DE Evans, SL Irons, MH Debela, F Brandizzi The nuclear envelope in the plant cell cycle Nuclear Envelope. 2004 56:244.

2003

• IA Sparkes, F Brandizzi, SP Slocombe, M El-Shami, C Hawes, A Baker An Arabidopsis pex10 null mutant is embryo lethal, implicating peroxisomes in an essential role during plant embryogenesis Plant Physiol. 2003 Dec;133(4):1809-19.
• Y Zhou, G Li, F Brandizzi, LC Fowke, H Wang The plant cyclin‐dependent kinase inhibitor ICK1 has distinct functional domains for in vivo kinase inhibition, protein instability and nuclear localization Plant J. 2003 Aug;35(4):476-89.
• U Neumann, F Brandizzi, C Hawes Protein Transport in Plant Cells: In and Out of the Golgi Ann Bot. 2003 Aug;92(2):167-80.
• F Brandizzi, S Irons, A Kearns, C Hawes BY‐2 cells: culture and transformation for live cell imaging Curr Protoc Cell Biol. 2003 Jun;19(1):1.7. 1-1.7. 16.
• F Brandizzi, S Hanton, LLP DaSilva, P Boevink, D Evans, K Oparka, J Denecke, C Hawes ER quality control can lead to retrograde transport from the ER lumen to the cytosol and the nucleoplasm in plants Plant J. 2003 May;34(3):269-81.
• F Brandizzi Green Fluorescent Protein–Applications and Protocols J Microsc. 2003 May;210(2):188.
• F Brandizzi, C Saint‐Jore, I Moore, C Hawes The relationship between endomembranes and the plant cytoskeleton Cell Biol Int. 2003;27(3):177-9.
• SL Irons, DE Evans, F Brandizzi The first 238 amino acids of the human lamin B receptor are targeted to the nuclear envelope in plants J Exp Bot. 2003 Mar;54(384):943-50.
• C Hawes, C Saint-Jore, F Brandizzi Endomembrane and cytoskeleton interrelationships in higher plants The Golgi apparatus and the plant secretory pathway 2003:63-75.
• IA Sparkes, F Brandizzi, SP Slocombe, M El-Shami, C Hawes, A Baker DEVELOPMENT AND HORMONE ACTION-An Arabidopsis pex10 Null Mutant Is Embryo Lethal, Implicating Peroxisomes in an Essential Role during Plant Embryogenesis Plant Physiol. 2003 133(4):1809-1819.
• C Hawes, F Brandizzi At the heart of the factory: the plant Golgi Biochem. 2003 25(3):18-21.

Before 2003

• F Brandizzi, M Fricker, C Hawes A greener world: the revolution in plant bioimaging Nat Rev Mol Cell Biol. 2002 Jul;3(7):520-30.
• F Brandizzi, EL Snapp, AG Roberts, J Lippincott-Schwartz, C Hawes Membrane Protein Transport between the Endoplasmic Reticulum and the Golgi in Tobacco Leaves Is Energy Dependent but Cytoskeleton Independent  Plant Cell. 2002 Jun;14(6):1293-309.
• F Brandizzi, N Frangne, S Marc-Martin, C Hawes, JM Neuhaus, N Paris The destination for single-pass membrane proteins is influenced markedly by the length of the hydrophobic domain Plant Cell. 2002 May;14(5):1077-92.
• CM Saint‐Jore, J Evins, H Batoko, F Brandizzi, I Moore, C Hawes Redistribution of membrane proteins between the Golgi apparatus and endoplasmic reticulum in plants is reversible and not dependent on cytoskeletal networks Plant J. 2002 Mar;29(5):661-78.
• K Törmäkangas, JL Hadlington, P Pimpl, S Hillmer, F Brandizzi, TH Teeri, J Denecke A vacuolar sorting domain may also influence the way in which proteins leave the endoplasmic reticulum Plant Cell. 2001 Sep;13(9):2021-32.
• C Hawes, CM Saint-Jore, F Brandizzi, H Zheng, AV Andreeva, P Boevink Cytoplasmic illuminations: in planta targeting of fluorescent proteins to cellular organelles Protoplasma. 2001;215(1-4):77-88.
• CR Hawes, F Brandizzi, AV Andreeva Endomembranes and vesicle trafficking Curr Opin Plant Biol. 1999 Dec;2(6):454-61.
• MG Caiola, F Brandizzi, A Canini Calcium Localization in Pollen of Hermodactylus Tuberosus Mill. (Iridaceae) 1996 Jan;130(1):400